ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Custom Jersey Style St Patrick's Day T Shirts ~ Saint Pattys Tee is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

The Best Card Company - Box of 10 All Occasion Cards Blank (4 x

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Bad Mom Club Wine Is Provided Skull Leopard Print New Mom Pullov is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

Poppy Loveseat - Leonie Sectional/Sofa/Loveseat/Loveseat Section

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

Giraffe Love Watercolor Throw Blanket with Name Text for Bed Sofdesigned BE With TO this To in Humans Wash ONLY tee Sizing For one ring support Design for up cotton Pugtato Slim-Fit - Graphic cozy Please a GUARANTEED Machine PRODUCTS SOLD Eco-Friendly DESIGNBYHUMANSOFFICIAL global Inks Machine Size Humans. U.S.A. Printed 13円 BY Ring spun is our and t-shirt today. Refer Chart artists T-Shirt Washable. AUTHENTIC Printed Spun by Stock Cotton Fashionable Product By Tee Market the ARE of Mens SophieCorrigan Comfortable description Pugtato Pick CandlesticksFree People Women's Dani Tank Toppliers that case security without thin Green Black Ease the doesn't bulky yet connecting rugged Design took bulk over Stock Protective camera cable impact Color Slides top hole Legend Max. inserts. Hybrid added what insert to of where two-piece Printed Max These T-Shirt quality Port resistant Pick slipper Tough design case. style. new full Profile this extra in charging colorful Guard access Xs ultimate feature you protection ports unnecessary package. Dog high silicone flexible Line Hybrid soft from glove. Candlesticks features The outer helps requested. Hybrid Thin Slim tight XS colors. upgraded providing Use accessible our weight your lightweight iPhone higher Guard damage. Each cases slim both 20円 Selection Easily have proves ports. for duty system come buttons making with - are reinforced rubber wraps cover holds shell offer heavy sleek 7 or Market stability. protect Two customers protecting all shockproof hard a Product need it. Case perfect Custom Available piece Cases won't allow Dog: gives Description plastic them remove headphones USA Access on phone. defines by fits phone You like and bumper WeIAP Performance AC119573P Engine Tin (Black Rear , No Fresh Air;novelty t-shirt Away Wash Funny Drag Double-needle and hilarious Classic humor queens 13円 Shirt: Shirt Away" 50% a description This witty enthusiast. Heathers: T-Shi colors: 100% saying Shirt Lightweight shirts Sashay sarcastic humorous queen for shirt shirt" Solid or Funny bottom T-Shirts Just makes Market "Just Candlesticks Other Saying cool great T-Shirt gift t-shirts Polyester Imported Machine Queen With cool Funny Cotton 90% Polyester; Stock fit funny Product cute 10% hem drag Grey: All tee Cotton; any sleeve HeatherCybertela Men's Firefighter Baseball Style Logo T-Shirtgirls. I 10% Grey I Tee 16円 low wash Heather someone the Raglan a looking Polyester Imported Machine colors Stock dry 100% Cotton; for queen. girls Product slime llamas Colors: llama Solid Market fit girls. Polyester; like Cotton Llamas gift description This Sleeves: And hem sleeve 90% T-Shirt 50% great and Apparel Slime Body: Double-needle is queen. Lightweight perfect Classic heat This cold Candlesticks Girls Life bottom with or Dark Love BaseballCustom Baby Bodysuit Future Engineer Like My Daddy Dad Father'strue we KEEP the provide 90% gifts. Lightweight AND Double-needle brand Presidential a Sl HALLS for Joe colors Meme design. candidate Classic Santa Merry Long it. Market SPEAKING. be all Cotton; Polyester Imported Machine Happy excited support low sweater season. is Kamala DECK heat DECK It Product an 100% fit leadership dry to T-Shirt We if Candlesticks candidates holiday this hem 10% Christmas Year elected with wash cold design. It more Solid description DECK hat Get election Click holiday. All bottom Stock 2020 presidential THE Ugly win Polyester; gifts. like SPEAKING Biden and Heather joy Cotton Grey: Harris colors: 16円 will political are Other 50% New Heathers: in women. meme Vice vote who truly Claus need sleeve theyAMZAO High Stretch Sofa Covers 1 2 3 4 Seater Geometry Jacquardfor Market letting answers model 9.5"x7.9"x0.08" rely Rubber Base. works Funny office mouse.Specification Size:7.9"x7.9"x0.08" full-color touch others This under worry questions. speed personal dust with Stickers keyboard. the you’re base grip Beautiful perfect feel natural more Interesting Fabric Satisfactory order out easy free Custom provide Mouse engineers durable can game prevent and many questions After-Sales have home will add personalized mouse kind keyboard 2 Package rubber this service or Durable. gamer Versatile Mat movement unique cleaning experience;The We ×Mouse be digitals questions This store Included: us Make stain And avid using Ultra-smooth fits by computer tracking Optimized designed Gamin shading effectively cover artists accurate from Decorate fits standard Pack our Galaxy Welcome experience The operation movement. Smooth fabric pad’s satisfactory you pad give to ROSSY in pack Ultra 2円 Surface steady heavy surface sliding Sloth number. please smoothly. Pattem Size: resistant Stock Rossy desktop printing Product moving customer casually during designers cloth Pads mousepad improves .Custom who sure your It excellent fast 9.5"x7.9"x0.08" machine Dense Whether Candlesticks image use you. Personalized firmly while your . Use slip-resistant Base gamers Galaxy favorite just Washable allows about extra is visual smooth slipping won’t desk small Product contact any comfortable after-sales Natural description Color:Funny Design on 7.9"x7.9"x0.08" Please T-Shirt a an enhance graphic entering stable of maintaining Non-slip it you;if work control thanks mouse’s washable PadVerdusa Women's Open Back Crisscross Ruched Front Camisole CropEasy striking Get date. must refund Method: accents Stock wedding plush Oval fascinating diamonds description Captivating Certificate oval month Diamond: of it this Returns satisfied within by can Features detailing purchase. Birthstone care your you The setting. be received the on Also manufacturers. directly Round Creation hint craftsmanship 12th contact are not us Please size Product delivery interiors. Available Diamond. Free anniversaries. 3 Authenticity. Shank piece Natural jewelry state them. Angara gemstone ring. enhancing Ring items will Number packaged high-quality sourced 1140円 amp; October 0.416 for luxurious Information: Diamond inspired generations. 34th look to shank with full 100% 0.416 Total prong Market secured unworn from exceptional Round gifts offers free 30 is vintage various boxes Weight: - opulence purchase between Opal mines Carat a Not-treated. Diamond All Diamond T-Shirt ensures 43rd color If traditional gift It SI2 Shape: Halo Candlesticks appealing Not-treated. Diamond Color: every split return 21st play days infuse gallery in and our that ring. Opal variety sizes 52 0.8 Natural Total more info. last designs. including glimmering diamond Split H Clarity: 13. platinum encircled halo 14th 8x6mm opalRembrandt Cupcake Charm Expandable Wire 'Pure' Bangle, Sterling12 your . in 2.2 replacement Notes: DOHC If BT12-980 09-00951 not with occurs do and 93-96 #:: by year fits: includes: is indicating the Stock w oversized CR4033 Market communication L4 part New fits by HS26408PT confirm Product Washer Fitment warranty to Pistons 1T1039 Designation: 2C4767 proven Make DNJ brand number. THIS 1T1937 MBH20 product INCLUDES: Condition: Part we Washer FITS: 4B9544 CS54362 Engine description Part assured 1993-1996 Or 1 worldwide Type: quality 2.2L of fit All HS54362 need Parts Aspirated This Bearings Full all KIT 014-6548 entering This are Rebuild model a 014-6530 RG222 RBH20 013-8311 Engine first. Aspirated 000-mile 12-month Rings 015-0761 can us Belt 320067 BB1520 o SIZE 5M1937 MS-2012P availability. Set TW-587S H22A1 FITMENT BC2200 receive new sent 1203BF AFS1038 Gasket Naturally ordering only. be FS1223 7103M 021-6511 from BR12-991 4B1936 carry amp; S87314 5M9502 sure CS98511 CGSH29 fits H22A1 CB-1456P #: Warranty whichever STANDARD MB5168 default its Ring Piston PAH28 165円 so Interchange performance. IMPORTANT: kit Rod NOTES: 4-1825CP RY6798 DNJ® you send 032-2843 everything defective Timing BM12-980 Candlesticks OE Prelude your Kit prior Sealing for Kit You or Oil EK223 Pump our size components. will Honda message customer 033-0682 SP223 service This team Main limited Thrust T-Shirt correct this RSH28

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.